1ZOA Oxidoreductase date May 12, 2005
title Crystal Structure Of A328v Mutant Of The Heme Domain Of P450 N-Palmitoylglycine
authors A.Hegda, B.Chen, D.C.Haines, M.Bondlela, D.Mullin, S.E.Graham, D.R.Tomchick, M.Machius, J.A.Peterson
compound source
Molecule: Bifunctional P-450:Nadph-P450 Reductase
Chain: A, B
Fragment: Cytochrome P450
Ec: 1.14.14.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Bacillus Megaterium
Organism_taxid: 1404
Gene: Cyp102a1, Cyp102
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dh5alpha F'Iq
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pproex-1
symmetry Space Group: P 1 21 1
R_factor 0.165 R_Free 0.196
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.110 148.050 63.670 90.00 98.56 90.00
method X-Ray Diffractionresolution 1.74 Å
ligand 140, GOL, HEM, MES enzyme Oxidoreductase E.C.1.14.14.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceA single active-site mutation of P450BM-3 dramatically enhances substrate binding and rate of product formation., Haines DC, Hegde A, Chen B, Zhao W, Bondlela M, Humphreys JM, Mullin DA, Tomchick DR, Machius M, Peterson JA, Biochemistry. 2011 Oct 4;50(39):8333-41. Epub 2011 Sep 6. PMID:21875028
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (174 Kb) [Save to disk]
  • Biological Unit Coordinates (1zoa.pdb1.gz) 85 Kb
  • Biological Unit Coordinates (1zoa.pdb2.gz) 86 Kb
  • LPC: Ligand-Protein Contacts for 1ZOA
  • CSU: Contacts of Structural Units for 1ZOA
  • Likely Quarternary Molecular Structure file(s) for 1ZOA
  • Structure Factors (869 Kb)
  • Retrieve 1ZOA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZOA from S2C, [Save to disk]
  • Re-refined 1zoa structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1ZOA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZOA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ZOA, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zoa] [1zoa_A] [1zoa_B]
  • SWISS-PROT database: [P14779]
  • Domain organization of [CPXB_BACME] by SWISSPFAM
  • Other resources with information on 1ZOA
  • Community annotation for 1ZOA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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