1ZOM	Hydrolase	date	May 13, 2005
title	Crystal Structure Of The Catalytic Domain Of Coagulation Fac Complex With A Peptidomimetic Inhibitor
authors	J.Lin, H.Deng, L.Jin, P.Pandey, M.Rynkiewicz, F.Bibbins, S.Cantin, S.Magee, J.Gorga
compound		source
Molecule: Coagulation Factor Xi Chain: A Fragment: Catalytic Domain Synonym: Plasma Thromboplastin Antecedent, Pta, Fxi Ec: 3.4.21.27 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: F11 Expression_system: Pichia Pastoris Expression_system_taxid: 4922 Expression_system_strain: X-33
symmetry	Space Group: I 2 3	R_factor 0.207 R_Free 0.226
crystal cell	length a length b length c angle alpha angle beta angle gamma 120.932 120.932 120.932 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.25 Å
ligand	339, SO4 BindingDB	enzyme	Hydrolase E.C.3.4.21.27 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Design, synthesis, and biological evaluation of peptidomimetic inhibitors of factor XIa as novel anticoagulants., Lin J, Deng H, Jin L, Pandey P, Quinn J, Cantin S, Rynkiewicz MJ, Gorga JC, Bibbins F, Celatka CA, Nagafuji P, Bannister TD, Meyers HV, Babine RE, Hayward NJ, Weaver D, Benjamin H, Stassen F, Abdel-Meguid SS, Strickler JE, J Med Chem. 2006 Dec 28;49(26):7781-91. PMID:17181160

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk] Biological Unit Coordinates (1zom.pdb1.gz) 42 Kb LPC: Ligand-Protein Contacts for 1ZOM CSU: Contacts of Structural Units for 1ZOM Likely Quarternary Molecular Structure file(s) for 1ZOM Structure Factors (194 Kb) Retrieve 1ZOM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1ZOM from S2C, [Save to disk] Re-refined 1zom structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1ZOM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1ZOM

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1ZOM, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1zom_A] [1zom] SWISS-PROT database: [P03951] Domain organization of [FA11_HUMAN] by SWISSPFAM Domain found in 1ZOM: [Tryp_SPc ] by SMART

Other resources with information on 1ZOM

Community annotation for 1ZOM at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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