1ZP5	Hydrolase	date	May 16, 2005
title	Crystal Structure Of The Complex Between Mmp-8 And A N-Hydro Inhibitor
authors	C.Campestre, M.Agamennone, P.Tortorella, S.Preziuso, A.Biasone, E G.Pochetti, F.Mazza, H.Tschesche, C.Gallina
compound		source
Molecule: Neutrophil Collagenase Chain: A Fragment: Catalytic Domain (80-242) Synonym: Matrix Metalloproteinase-8, Mmp-8, Pmnl Collagenas Cl; Ec: 3.4.24.34 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Mmp8, Clg1 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Psvb30
symmetry	Space Group: P 21 21 21	R_factor 0.216 R_Free 0.251
crystal cell	length a length b length c angle alpha angle beta angle gamma 32.387 52.675 67.331 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	2NI, CA, ZN BindingDB	enzyme	Hydrolase E.C.3.4.24.34 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	N-Hydroxyurea as zinc binding group in matrix metalloproteinase inhibition: Mode of binding in a complex with MMP-8., Campestre C, Agamennone M, Tortorella P, Preziuso S, Biasone A, Gavuzzo E, Pochetti G, Mazza F, Hiller O, Tschesche H, Consalvi V, Gallina C, Bioorg Med Chem Lett 2006 Jan 1;16(1):20-24. Epub 2005 Oct 18. PMID:16242329

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk] Biological Unit Coordinates (1zp5.pdb1.gz) 30 Kb LPC: Ligand-Protein Contacts for 1ZP5 CSU: Contacts of Structural Units for 1ZP5 Likely Quarternary Molecular Structure file(s) for 1ZP5 Structure Factors (87 Kb) Retrieve 1ZP5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1ZP5 from S2C, [Save to disk] Re-refined 1zp5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1ZP5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1ZP5

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1ZP5, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1zp5] [1zp5_A] SWISS-PROT database: [P22894] Domain organization of [MMP8_HUMAN] by SWISSPFAM Domain found in 1ZP5: [ZnMc ] by SMART

Other resources with information on 1ZP5

Community annotation for 1ZP5 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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