1ZPB Hydrolase date May 16, 2005
title Crystal Structure Of The Catalytic Domain Of Coagulation Fac Complex With 4-Methyl-Pentanoic Acid {1-[4-Guanidino-1-(Thi Carbonyl)-Butylcarbamoyl]-2-Methyl-Propyl}-Amide
authors H.Deng, T.D.Bannister, L.Jin, P.Nagafuji, C.A.Celatka, J.Lin, T.I. M.J.Rynkiewicz, J.Quinn, F.Bibbins, P.Pandey, J.Gorga, R.E.Babin H.V.Meyers, S.S.Abdel-Meguid, J.E.Strickler
compound source
Molecule: Coagulation Factor Xi
Chain: A
Fragment: Catalytic Domain
Synonym: Plasma Thromboplastin Antecedent, Pta, Fxi
Ec: 3.4.21.27
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: F11
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
Expression_system_strain: X-33
symmetry Space Group: I 2 3
R_factor 0.190 R_Free 0.216
crystal
cell
length a length b length c angle alpha angle beta angle gamma
121.173 121.173 121.173 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand 995, SO4 enzyme Hydrolase E.C.3.4.21.27 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSynthesis, SAR exploration, and X-ray crystal structures of factor XIa inhibitors containing an alpha-ketothiazole arginine., Deng H, Bannister TD, Jin L, Babine RE, Quinn J, Nagafuji P, Celatka CA, Lin J, Lazarova TI, Rynkiewicz MJ, Bibbins F, Pandey P, Gorga J, Meyers HV, Abdel-Meguid SS, Strickler JE, Bioorg Med Chem Lett. 2006 Mar 6;. PMID:16524727
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (1zpb.pdb1.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 1ZPB
  • CSU: Contacts of Structural Units for 1ZPB
  • Likely Quarternary Molecular Structure file(s) for 1ZPB
  • Structure Factors (261 Kb)
  • Retrieve 1ZPB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZPB from S2C, [Save to disk]
  • Re-refined 1zpb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1ZPB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZPB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ZPB, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zpb_A] [1zpb]
  • SWISS-PROT database: [P03951]
  • Domain organization of [FA11_HUMAN] by SWISSPFAM
  • Domain found in 1ZPB: [Tryp_SPc ] by SMART
  • Other resources with information on 1ZPB
  • Community annotation for 1ZPB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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