1ZQ5 Oxidoreductase date May 18, 2005
title Crystal Structure Of Human Androgenic 17beta-Hydroxysteroid Dehydrogenase Type 5 In Complexed With A Potent Inhibitor E
authors W.Qiu, M.Zhou, D.Ghanmi, V.Luu-The, F.Labrie, S.X.Lin
compound source
Molecule: Aldo-Keto Reductase Family 1 Member C3
Chain: A
Synonym: 17beta-Hydroxysteroid Dehydrogenase Type 5; Trans- Dihydrobenzene-1,2-Diol Dehydrogenase; Chlordecone Reductas Hakrb; Ha1753; Dihydrodiol Dehydrogenase, Type I; Dihydrodi Dehydrogenase 3; Dd3; 3-Alpha-Hydroxysteroid Dehydrogenase; Hsd; Prostaglandin F Synthase;
Ec: 1.1.1.62, 1.3.1.20, 1.1.1.188
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Akr1c3, Ddh1, Kiaa0119, Pgfs
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcmv-Neo
symmetry Space Group: P 21 21 21
R_factor 0.181 R_Free 0.197
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.347 62.781 95.974 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.30 Å
ligand ACT, E04, NAP BindingDB enzyme Oxidoreductase E.C.1.1.1.62 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • NADP-retinol dehydrogenase a...


  • Primary referenceStructure-based inhibitor design for an enzyme that binds different steroids: a potent inhibitor for human type 5 17beta-hydroxysteroid dehydrogenase., Qiu W, Zhou M, Mazumdar M, Azzi A, Ghanmi D, Luu-The V, Labrie F, Lin SX, J Biol Chem. 2007 Mar 16;282(11):8368-79. Epub 2006 Dec 13. PMID:17166832
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (1zq5.pdb1.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 1ZQ5
  • CSU: Contacts of Structural Units for 1ZQ5
  • Likely Quarternary Molecular Structure file(s) for 1ZQ5
  • Structure Factors (598 Kb)
  • Retrieve 1ZQ5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZQ5 from S2C, [Save to disk]
  • Re-refined 1zq5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1ZQ5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZQ5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ZQ5, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zq5] [1zq5_A]
  • SWISS-PROT database: [P42330]
  • Domain organization of [AK1C3_HUMAN] by SWISSPFAM
  • Other resources with information on 1ZQ5
  • Community annotation for 1ZQ5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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