3KZN Transferase date Dec 08, 2009
title Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase C With N-Acetyl-L-Ornirthine
authors D.Shi, X.Yu, N.M.Allewell, M.Tuchman
compound source
Molecule: N-Acetylornithine Carbamoyltransferase
Chain: A
Synonym: Aotcase
Ec: 2.1.3.9
Engineered: Yes
Organism_scientific: Xanthomonas Campestris Pv. Campestris
Organism_taxid: 190485
Strain: Atcc 33913
Gene: Argf, Argf', Xcc2249
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: I 21 3
R_factor 0.189 R_Free 0.212
crystal
cell
length a length b length c angle alpha angle beta angle gamma
130.198 130.198 130.198 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand AOR, GOL, KCX, SO4 enzyme Transferase E.C.2.1.3.9 BRENDA
note 3KZN supersedes 1ZQ6
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructures of N-acetylornithine transcarbamoylase from Xanthomonas campestris complexed with substrates and substrate analogs imply mechanisms for substrate binding and catalysis., Shi D, Yu X, Roth L, Morizono H, Tuchman M, Allewell NM, Proteins. 2006 Aug 1;64(2):532-42. PMID:16741992
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk]
  • Biological Unit Coordinates (3kzn.pdb1.gz) 168 Kb
  • LPC: Ligand-Protein Contacts for 3KZN
  • CSU: Contacts of Structural Units for 3KZN
  • Structure Factors (292 Kb)
  • Retrieve 3KZN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KZN from S2C, [Save to disk]
  • Re-refined 3kzn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3KZN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3KZN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3KZN, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kzn_A] [3kzn]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3KZN
  • Community annotation for 3KZN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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