1ZQ9 Transferase date May 18, 2005
title Crystal Structure Of Human Dimethyladenosine Transferase
authors A.Dong, H.Wu, H.Zeng, P.Loppnau, M.Sundstrom, C.Arrowsmith, A.Edwa A.Bochkarev, A.Plotnikov, Structural Genomics Consortium (Sgc
compound source
Molecule: Probable Dimethyladenosine Transferase
Chain: A, B
Synonym: S- Adenosylmethionine-6-N',N'-Adenosylrrna, Dimethyltransferase, 18s Rrna Dimethylase, Hussy-05;
Ec: 2.1.1.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet28
symmetry Space Group: P 1 21 1
R_factor 0.164 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.629 185.243 45.072 90.00 91.30 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand SAM enzyme Transferase E.C.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]
  • Biological Unit Coordinates (1zq9.pdb1.gz) 103 Kb
  • LPC: Ligand-Protein Contacts for 1ZQ9
  • CSU: Contacts of Structural Units for 1ZQ9
  • Likely Quarternary Molecular Structure file(s) for 1ZQ9
  • Structure Factors (337 Kb)
  • Retrieve 1ZQ9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZQ9 from S2C, [Save to disk]
  • Re-refined 1zq9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1ZQ9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZQ9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ZQ9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zq9_B] [1zq9_A] [1zq9]
  • SWISS-PROT database: [Q9UNQ2]
  • Domain organization of [DIMT1_HUMAN] by SWISSPFAM
  • Domain found in 1ZQ9: [rADc ] by SMART
  • Other resources with information on 1ZQ9
  • Community annotation for 1ZQ9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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