1ZR8 Hydrolase date May 19, 2005
title Crystal Structure Of The Complex Formed Between Group II Pho A2 And A Plant Alkaloid Ajmaline At 2.0a Resolution
authors M.Mahendra, N.Singh, P.Kaur, S.Sharma, T.P.Singh
compound source
Molecule: Phospholipase A2 Vrv-Pl-Viiia
Chain: A
Synonym: Phosphatidylcholine 2- Acylhydrolase, Dpla2
Ec: 3.1.1.4
Organism_scientific: Daboia Russellii Pulchella
Organism_taxid: 97228
Strain: Pulchella
Other_details: Venom
symmetry Space Group: P 43
R_factor 0.186 R_Free 0.221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.257 53.257 48.657 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.03 Å
ligand ACY, AJM, SO4 enzyme Hydrolase E.C.3.1.1.4 BRENDA
related structures by homologous chain: 1JQ8
Gene
Ontology
ChainFunctionProcessComponent
A
  • toxin activity


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (27 Kb) [Save to disk]
  • Biological Unit Coordinates (1zr8.pdb1.gz) 22 Kb
  • LPC: Ligand-Protein Contacts for 1ZR8
  • CSU: Contacts of Structural Units for 1ZR8
  • Likely Quarternary Molecular Structure file(s) for 1ZR8
  • Retrieve 1ZR8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZR8 from S2C, [Save to disk]
  • View 1ZR8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZR8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ZR8, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zr8] [1zr8_A]
  • SWISS-PROT database: [P59071]
  • Domain organization of [PA28_DABRR] by SWISSPFAM
  • Domain found in 1ZR8: [PA2c ] by SMART
  • Other resources with information on 1ZR8
  • Community annotation for 1ZR8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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