OCA Atlas for 1ZRV

1ZRV

Antimicrobial Protein, Antibiotic

date

May 23, 2005

title

Solution Structure Of Spinigerin In H20tfe 50%

authors

C.Landon, H.Meudal, N.Boulanger, P.Bulet, F.Vovelle

compound

source

Molecule: Spinigerin
Chain: A
Engineered: Yes

Synthetic: Yes
Other_details: Solid-Phase Synthesis (Fmoc). Sequence Occur Naturally In Pseudacanthotermes Spiniger

method

Solution NMR

Gene
Ontology

Chain	Function	Process	Component
A

Primary reference

Solution structures of stomoxyn and spinigerin, two insect antimicrobial peptides with an alpha-helical conformation., Landon C, Meudal H, Boulanger N, Bulet P, Vovelle1 F, Biopolymers 2005 Sep 16;. PMID:16170803

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]

Biological Unit Coordinates (1zrv.pdb1.gz) 9 Kb

CSU: Contacts of Structural Units for 1ZRV

Retrieve 1ZRV in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1ZRV from S2C, [Save to disk]

View 1ZRV in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1ZRV

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 1ZRV, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1zrv_A] [1zrv]

SWISS-PROT database: [P82357]

Domain organization of [SPING_PSEUS] by SWISSPFAM

Other resources with information on 1ZRV

Community annotation for 1ZRV at PDBWiki (http://pdbwiki.org)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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