1ZSK Hydrolase date May 24, 2005
title Crystal Structure Of The Catalytic Domain Of Coagulation Fac Complex With 6-Carbamimidoyl-4-(3-Hydroxy-2-Methyl-Benzoyla Naphthalene-2-Carboxylic Acid Methyl Ester
authors Z.Guo, T.Bannister, R.Noll, L.Jin, M.Rynkiewicz, F.Bibbins, S.Mage J.Gorga, R.E.Babine, J.E.Strickler, H.V.Meyers, S.S.Abdel-Megui
compound source
Molecule: Coagulation Factor Xi
Chain: A
Fragment: Coagulation Factor Xia Light Chain, Catalytic Dom
Synonym: Plasma Thromboplastin Antecedent, Pta, Fxi
Ec: 3.4.21.27
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: F11
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
Expression_system_strain: X-33
symmetry Space Group: I 2 3
R_factor 0.198 R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
121.044 121.044 121.044 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand 421, BCT, SO4 enzyme Hydrolase E.C.3.4.21.27 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (1zsk.pdb1.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 1ZSK
  • CSU: Contacts of Structural Units for 1ZSK
  • Likely Quarternary Molecular Structure file(s) for 1ZSK
  • Structure Factors (336 Kb)
  • Retrieve 1ZSK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZSK from S2C, [Save to disk]
  • Re-refined 1zsk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1ZSK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZSK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ZSK, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zsk] [1zsk_A]
  • SWISS-PROT database: [P03951]
  • Domain organization of [FA11_HUMAN] by SWISSPFAM
  • Domain found in 1ZSK: [Tryp_SPc ] by SMART
  • Other resources with information on 1ZSK
  • Community annotation for 1ZSK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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