1ZTL Hydrolase date May 27, 2005
title Crystal Structure Of The Catalytic Domain Of Coagulation Fac Complex With N-[4-Guanidino-1-(Thiazole-2-Carbonyl)-Butyl]- 5-[(Quinolin-8-Ylmethyl)-Amino]-2-M-Tolyl-6h-Pyrimidin-1-Yl Acetamide
authors P.Nagafuji, L.Jin, M.Rynkiewicz, J.Quinn, F.Bibbins, H.Meyers, R.B J.E.Strickler, S.S.Abdel-Meguid
compound source
Molecule: Coagulation Factor Xi
Chain: A
Fragment: Catalytic Domain
Synonym: Plasma Thromboplastin Antecedent, Pta, Fxi
Ec: 3.4.21.27
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: F11
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
Expression_system_strain: X-33
symmetry Space Group: I 2 3
R_factor 0.208 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
121.965 121.965 121.965 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand 737, SO4 enzyme Hydrolase E.C.3.4.21.27 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (1ztl.pdb1.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 1ZTL
  • CSU: Contacts of Structural Units for 1ZTL
  • Likely Quarternary Molecular Structure file(s) for 1ZTL
  • Structure Factors (130 Kb)
  • Retrieve 1ZTL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZTL from S2C, [Save to disk]
  • Re-refined 1ztl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1ZTL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZTL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ZTL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ztl] [1ztl_A]
  • SWISS-PROT database: [P03951]
  • Domain organization of [FA11_HUMAN] by SWISSPFAM
  • Domain found in 1ZTL: [Tryp_SPc ] by SMART
  • Other resources with information on 1ZTL
  • Community annotation for 1ZTL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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