1ZTQ Hydrolase date May 27, 2005
title Crystal Structure Of The Catalytic Domain Of Mmp-13 Complexe Way-033
authors J.Wu, T.S.Rush Iii, R.Hotchandani, X.Du, M.Geck, E.Collins, Z.B.Xu J.Skotnicki, J.I.Levin, F.Lovering
compound source
Molecule: Collagenase 3
Chain: A, B, C, D
Fragment: Mmp-13 Catalytic Domain
Synonym: Matrix Metalloproteinase-13, Mmp-13
Ec: 3.4.24.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mmp13
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21a
symmetry Space Group: P 1 21 1
R_factor 0.236 R_Free 0.287
crystal
cell
length a length b length c angle alpha angle beta angle gamma
35.937 135.252 69.385 90.00 104.95 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand 033, CA, ZN BindingDB enzyme Hydrolase E.C.3.4.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceIdentification of potent and selective MMP-13 inhibitors., Wu J, Rush TS 3rd, Hotchandani R, Du X, Geck M, Collins E, Xu ZB, Skotnicki J, Levin JI, Lovering FE, Bioorg Med Chem Lett. 2005 Sep 15;15(18):4105-9. PMID:16005220
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (121 Kb) [Save to disk]
  • Biological Unit Coordinates (1ztq.pdb1.gz) 32 Kb
  • Biological Unit Coordinates (1ztq.pdb2.gz) 32 Kb
  • Biological Unit Coordinates (1ztq.pdb3.gz) 30 Kb
  • Biological Unit Coordinates (1ztq.pdb4.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 1ZTQ
  • CSU: Contacts of Structural Units for 1ZTQ
  • Likely Quarternary Molecular Structure file(s) for 1ZTQ
  • Retrieve 1ZTQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZTQ from S2C, [Save to disk]
  • View 1ZTQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZTQ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ZTQ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ztq_B] [1ztq_D] [1ztq_C] [1ztq_A] [1ztq]
  • SWISS-PROT database: [P45452]
  • Domain organization of [MMP13_HUMAN] by SWISSPFAM
  • Domain found in 1ZTQ: [ZnMc ] by SMART
  • Other resources with information on 1ZTQ
  • Community annotation for 1ZTQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science