1ZTU Transferase date May 27, 2005
title Structure Of The Chromophore Binding Domain Of Bacterial Phy
authors J.R.Wagner, J.S.Brunzelle, K.T.Forest, R.D.Vierstra
compound source
Molecule: Bacteriophytochrome
Chain: A
Fragment: Chromophore Bindidng Domain
Synonym: Phytochrome-Like Protein
Ec: 2.7.3.-
Engineered: Yes
Mutation: Yes
Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 1299
Gene: Bphp
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21a(+)
symmetry Space Group: P 21 21 2
R_factor 0.237 R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.876 133.666 49.938 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand BLA, MSE enzyme Transferase E.C.2.7.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA light-sensing knot revealed by the structure of the chromophore-binding domain of phytochrome., Wagner JR, Brunzelle JS, Forest KT, Vierstra RD, Nature. 2005 Nov 17;438(7066):325-31. PMID:16292304
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (1ztu.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 1ZTU
  • CSU: Contacts of Structural Units for 1ZTU
  • Likely Quarternary Molecular Structure file(s) for 1ZTU
  • Structure Factors (110 Kb)
  • Retrieve 1ZTU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZTU from S2C, [Save to disk]
  • Re-refined 1ztu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1ZTU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZTU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ZTU, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ztu] [1ztu_A]
  • SWISS-PROT database: [Q9RZA4]
  • Domain organization of [BPHY_DEIRA] by SWISSPFAM
  • Domains found in 1ZTU: [GAF] [PAS ] by SMART
  • Other resources with information on 1ZTU
  • Community annotation for 1ZTU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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