1ZUB	Endocytosis Exocytosis	date	May 30, 2005
title	Solution Structure Of The Rim1alpha Pdz Domain In Complex Wi Elks1b C-Terminal Peptide
authors	J.Lu, H.Li, Y.Wang, T.C.Sudhof, J.Rizo
compound		source
Molecule: Regulating Synaptic Membrane Exocytosis Protein 1 Chain: A Fragment: Pdz Domain Synonym: Rab3-Interacting Molecule 1, Rim 1 Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Norway Rat Organism_taxid: 10116 Gene: Rims1, Rim1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21-Codon+ Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-Kt
Molecule: Elks1b Chain: B Synonym: Erc Protein 1, Erc1, Caz-Associated Structural Pro Cast2, Rab6 Interacting Protein 2, C-Terminal Peptide; Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Norway Rat Organism_taxid: 10116 Gene: Rab6ip2, Cast2, Elks, Erc1 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Ptmha
method	Solution NMR
Gene Ontology	Chain Function Process Component A
Primary reference	Solution Structure of the RIM1alpha PDZ Domain in Complex with an ELKS1b C-terminal Peptide., Lu J, Li H, Wang Y, Sudhof TC, Rizo J, J Mol Biol 2005 Sep 16;352(2):455-66. PMID:16095618

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (605 Kb) [Save to disk] Biological Unit Coordinates (1zub.pdb1.gz) 30 Kb CSU: Contacts of Structural Units for 1ZUB Original NMR restraints for 1ZUB from PDB Retrieve 1ZUB in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1ZUB from S2C, [Save to disk]

View 1ZUB in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1ZUB

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1ZUB, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1zub] [1zub_B] [1zub_A] SWISS-PROT database: [Q811U3] [Q9JIR4] Domain organization of [RB6I2_RAT] [RIMS1_RAT] by SWISSPFAM Domain found in 1ZUB: [PDZ ] by SMART

Other resources with information on 1ZUB

Community annotation for 1ZUB at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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