1ZVQ Oncoprotein date Jun 02, 2005
title Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
authors B.Ford, N.Nassar
compound source
Molecule: Transforming Protein P21h-Ras-1
Chain: A
Synonym: C-H-Ras
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hras, Hras1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Codon Plus
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pproex-Htb
symmetry Space Group: H 3 2
R_factor 0.186 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.992 92.992 121.015 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand GDP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of a transient intermediate for GTP hydrolysis by ras., Ford B, Hornak V, Kleinman H, Nassar N, Structure. 2006 Mar;14(3):427-36. PMID:16531227
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk]
  • Biological Unit Coordinates (1zvq.pdb1.gz) 29 Kb
  • LPC: Ligand-Protein Contacts for 1ZVQ
  • CSU: Contacts of Structural Units for 1ZVQ
  • Likely Quarternary Molecular Structure file(s) for 1ZVQ
  • Structure Factors (108 Kb)
  • Retrieve 1ZVQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZVQ from S2C, [Save to disk]
  • Re-refined 1zvq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1ZVQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZVQ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ZVQ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zvq] [1zvq_A]
  • SWISS-PROT database: [P01112]
  • Domain organization of [RASH_HUMAN] by SWISSPFAM
  • Domain found in 1ZVQ: [RAS ] by SMART
  • Other resources with information on 1ZVQ
  • Community annotation for 1ZVQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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