1ZVR Hydrolase date Jun 02, 2005
title Crystal Structure Of Mtmr2 In Complex With Phosphatidylinosi Bisphosphate
authors M.J.Begley, G.S.Taylor, M.A.Brock, P.Ghosh, V.L.Woods, J.E.Dixon
compound source
Molecule: Myotubularin-Related Protein 2
Chain: A
Fragment: Ph-Gram And Phosphatase Domains
Ec: 3.1.3.-
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mtmr2, Kiaa1073
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21de3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21a
symmetry Space Group: P 41 21 2
R_factor 0.228 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.180 66.180 262.370 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.98 Å
ligand 3PI, EDO enzyme Hydrolase E.C.3.1.3 BRENDA
Primary referenceMolecular basis for substrate recognition by MTMR2, a myotubularin family phosphoinositide phosphatase., Begley MJ, Taylor GS, Brock MA, Ghosh P, Woods VL, Dixon JE, Proc Natl Acad Sci U S A. 2006 Jan 24;103(4):927-32. Epub 2006 Jan 12. PMID:16410353
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk]
  • Biological Unit Coordinates (1zvr.pdb1.gz) 93 Kb
  • LPC: Ligand-Protein Contacts for 1ZVR
  • CSU: Contacts of Structural Units for 1ZVR
  • Likely Quarternary Molecular Structure file(s) for 1ZVR
  • Structure Factors (507 Kb)
  • Retrieve 1ZVR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZVR from S2C, [Save to disk]
  • Re-refined 1zvr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1ZVR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZVR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ZVR, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zvr] [1zvr_A]
  • SWISS-PROT database: [Q13614]
  • Domain organization of [MTMR2_HUMAN] by SWISSPFAM
  • Domains found in 1ZVR: [GRAM] [PTPc_DSPc ] by SMART
  • Other resources with information on 1ZVR
  • Community annotation for 1ZVR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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