1ZVY Hydrolase Immune System date Jun 03, 2005
title Crystal Structure Of The Vhh D3-L11 In Complex With Hen Egg Lysozyme
authors E.De Genst, K.Silence, K.Decanniere, K.Conrath, R.Loris, J.Kinne, S.Muyldermans, L.Wyns
compound source
Molecule: Immunoglobulin Heavy Chain Antibody Variable Doma
Chain: A
Fragment: D3-L11
Engineered: Yes
Organism_scientific: Camelus Dromedarius
Organism_common: Arabian Camel
Organism_taxid: 9838
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Wk6su-
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phen06

Molecule: Lysozyme C
Chain: B
Synonym: 1,4-Beta-N-Acetylmuramidase C, Allergen Gal D 4, G
Ec: 3.2.1.17

Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
symmetry Space Group: P 1 21 1
R_factor 0.209 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.913 49.879 56.995 90.00 92.08 90.00
method X-Ray Diffractionresolution 1.63 Å
ligand GOL, PO4 enzyme Hydrolase E.C.3.2.1.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceMolecular basis for the preferential cleft recognition by dromedary heavy-chain antibodies., De Genst E, Silence K, Decanniere K, Conrath K, Loris R, Kinne J, Muyldermans S, Wyns L, Proc Natl Acad Sci U S A. 2006 Mar 21;103(12):4586-91. Epub 2006 Mar 13. PMID:16537393
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (1zvy.pdb1.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 1ZVY
  • CSU: Contacts of Structural Units for 1ZVY
  • Likely Quarternary Molecular Structure file(s) for 1ZVY
  • Structure Factors (232 Kb)
  • Retrieve 1ZVY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZVY from S2C, [Save to disk]
  • Re-refined 1zvy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1ZVY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZVY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ZVY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zvy_B] [1zvy] [1zvy_A]
  • SWISS-PROT database: [P00698]
  • Domain organization of [LYSC_CHICK] by SWISSPFAM
  • Domains found in 1ZVY: [IGv] [LYZ1 ] by SMART
  • Other resources with information on 1ZVY
  • Community annotation for 1ZVY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science