1ZYJ Transferase date Jun 10, 2005
title Human P38 Map Kinase In Complex With Inhibitor 1a
authors M.Karpusas, E.L.Michelotti, E.B.Springman
compound source
Molecule: Mitogen-Activated Protein Kinase 14
Chain: A
Synonym: Mitogen-Activated Protein Kinase P38 Alpha, Map Ki Alpha, Cytokine Suppressive Anti-Inflammatory Drug Binding Csaid Binding Protein, Csbp, Max-Interacting Protein 2, Map Mxi2, Sapk2a;
Ec: 2.7.1.37
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mapk14, Csbp, Csbp1, Csbp2, Mxi2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosettatm De3
symmetry Space Group: P 21 21 21
R_factor 0.243 R_Free 0.267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.760 70.920 75.800 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand BI5, BOG BindingDB enzyme Transferase E.C.2.7.1.37 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceTwo classes of p38alpha MAP kinase inhibitors having a common diphenylether core but exhibiting divergent binding modes., Michelotti EL, Moffett KK, Nguyen D, Kelly MJ, Shetty R, Chai X, Northrop K, Namboodiri V, Campbell B, Flynn GA, Fujimoto T, Hollinger FP, Bukhtiyarova M, Springman EB, Karpusas M, Bioorg Med Chem Lett 2005 Sep 15;. PMID:16169718
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk]
  • Biological Unit Coordinates (1zyj.pdb1.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 1ZYJ
  • CSU: Contacts of Structural Units for 1ZYJ
  • Likely Quarternary Molecular Structure file(s) for 1ZYJ
  • Structure Factors (373 Kb)
  • Retrieve 1ZYJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZYJ from S2C, [Save to disk]
  • Re-refined 1zyj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1ZYJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZYJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ZYJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zyj_A] [1zyj]
  • SWISS-PROT database: [Q16539]
  • Domain organization of [MK14_HUMAN] by SWISSPFAM
  • Domain found in 1ZYJ: [S_TKc ] by SMART
  • Other resources with information on 1ZYJ
  • Community annotation for 1ZYJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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