1ZZ3 Hydrolase date Jun 13, 2005
title Crystal Structure Of A Hdac-Like Protein With Cypx Bound
authors T.K.Nielsen, C.Hildmann, A.Dickmanns, A.Schwienhorst, R.Ficner
compound source
Molecule: Histone Deacetylase-Like Amidohydrolase
Chain: A, B, C, D
Synonym: Hdac-Like Amidohydrolase, Hdah
Ec: 3.5.1.-
Engineered: Yes
Organism_scientific: Alcaligenaceae Bacterium
Organism_taxid: 242601
Strain: Fb188
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: M15
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe
symmetry Space Group: P 1 21 1
R_factor 0.156 R_Free 0.191
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.098 94.486 122.632 90.00 104.27 90.00
method X-Ray Diffractionresolution 1.76 Å
ligand 3YP, K, ZN enzyme Hydrolase E.C.3.5.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCrystal structure of a bacterial class 2 histone deacetylase homologue., Nielsen TK, Hildmann C, Dickmanns A, Schwienhorst A, Ficner R, J Mol Biol 2005 Nov 18;354(1):107-20. Epub 2005 Oct 7. PMID:16242151
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (249 Kb) [Save to disk]
  • Biological Unit Coordinates (1zz3.pdb1.gz) 64 Kb
  • Biological Unit Coordinates (1zz3.pdb2.gz) 64 Kb
  • Biological Unit Coordinates (1zz3.pdb3.gz) 64 Kb
  • Biological Unit Coordinates (1zz3.pdb4.gz) 64 Kb
  • Biological Unit Coordinates (1zz3.pdb5.gz) 242 Kb
  • LPC: Ligand-Protein Contacts for 1ZZ3
  • CSU: Contacts of Structural Units for 1ZZ3
  • Likely Quarternary Molecular Structure file(s) for 1ZZ3
  • Structure Factors (834 Kb)
  • Retrieve 1ZZ3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZZ3 from S2C, [Save to disk]
  • Re-refined 1zz3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1ZZ3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZZ3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ZZ3, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zz3] [1zz3_B] [1zz3_C] [1zz3_A] [1zz3_D]
  • SWISS-PROT database: [Q70I53]
  • Domain organization of [HDAH_ALCSD] by SWISSPFAM
  • Other resources with information on 1ZZ3
  • Community annotation for 1ZZ3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science