213D Dna date Jun 28, 1995
title Crystal Structure Of The A-Dna Decamer D(Cciggccm5cgg) At 1. Angstroms Showing The Unexpected Wobble I.M5c Base Pair
authors B.Ramakrishnan, M.Sundaralingam
compound source
Molecule: Dna (5'-D(Cpcpipgpgpcpcp(5cm)Pgpg)-3')
Chain: A, B
Engineered: Yes
 Synthetic: Yes
symmetry Space Group: P 21 21 21
R_factor 0.163 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
25.020 44.950 47.620 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand 5CM enzyme
Primary referenceCrystal structure of the A-DNA decamer d(CCIGGCCm5CGG) at 1.6 A showing the unexpected wobble I.m5C base pair., Ramakrishnan B, Sundaralingam M, Biophys J 1995 Aug;69(2):553-8. PMID:8527669
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (14 Kb) [Save to disk]
  • Biological Unit Coordinates (213d.pdb1.gz) 10 Kb
  • LPC: Ligand-Protein Contacts for 213D
  • CSU: Contacts of Structural Units for 213D
  • Likely Quarternary Molecular Structure file(s) for 213D
  • Structure Factors (26 Kb)
  • Retrieve 213D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 213D from S2C, [Save to disk]
  • Re-refined 213d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 213D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 213D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 213D, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [213d_A] [213d_B] [213d]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 213D
  • Community annotation for 213D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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