232D Dna date Sep 05, 1995
title The High Resolution Crystal Structure Of The Dna Decamer D(A
authors C.M.Nunn, S.Neidle
compound source
Molecule: Dna (5'-D(Apgpgpcpaptpgpcpcpt)-3')
Chain: A
Engineered: Yes
 Synthetic: Yes
symmetry Space Group: P 61 2 2
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
32.700 32.700 78.700 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.30 Å
ligand NCO enzyme
Primary referenceThe high resolution crystal structure of the DNA decamer d(AGGCATGCCT)., Nunn CM, Neidle S, J Mol Biol 1996 Feb 23;256(2):340-51. PMID:8594201
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (10 Kb) [Save to disk]
  • Biological Unit Coordinates (232d.pdb1.gz) 9 Kb
  • LPC: Ligand-Protein Contacts for 232D
  • CSU: Contacts of Structural Units for 232D
  • Likely Quarternary Molecular Structure file(s) for 232D
  • Retrieve 232D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 232D from S2C, [Save to disk]
    • View 232D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 232D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 232D, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [232d] [232d_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 232D
  • Community annotation for 232D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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