237D Dna date Sep 28, 1995
title Crystal Structure Of A Dna Decamer Showing A Novel Pseudo Fo Helix-Helix Junction
authors N.Spink, C.M.Nunn, J.Vojtechovsky, H.M.Berman, S.Neidle
compound source
Molecule: Dna (5'-D(Cpgpcpapaptptpgpcpg)-3')
Chain: A
Engineered: Yes
 Synthetic: Yes
symmetry Space Group: I 21 21 21
R_factor 0.212 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
27.010 39.260 54.060 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
Primary referenceCrystal structure of a DNA decamer showing a novel pseudo four-way helix-helix junction., Spink N, Nunn CM, Vojtechovsky J, Berman HM, Neidle S, Proc Natl Acad Sci U S A 1995 Nov 7;92(23):10767-71. PMID:7479880
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (8 Kb) [Save to disk]
  • Biological Unit Coordinates (237d.pdb1.gz) 8 Kb
  • CSU: Contacts of Structural Units for 237D
  • Likely Quarternary Molecular Structure file(s) for 237D
  • Retrieve 237D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 237D from S2C, [Save to disk]
    • View 237D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 237D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 237D, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [237d_A] [237d]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 237D
  • Community annotation for 237D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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