248D Dna Rna date Feb 02, 1996
title Crystal Structures Of An A-Form Duplex With Single-Adenosine And A Conformational Basis For Site Specific Rna Self-Cleav
authors S.Portmann, S.Grimm, C.Workman, N.Usman, M.Egli
compound source
Molecule: Dnarna (5'-R(Gpcpgp)-D(Aptpaptpap)-R( 3'), Orthorhombic;
Chain: A
Engineered: Yes
Synthetic: Yes
symmetry Space Group: C 2 2 21
R_factor 0.159 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
25.890 33.970 57.560 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.83 Å
ligand SPM enzyme
Primary referenceCrystal structures of an A-form duplex with single-adenosine bulges and a conformational basis for site-specific RNA self-cleavage., Portmann S, Grimm S, Workman C, Usman N, Egli M, Chem Biol 1996 Mar;3(3):173-84. PMID:8807843
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (9 Kb) [Save to disk]
  • Biological Unit Coordinates (248d.pdb1.gz) 8 Kb
  • LPC: Ligand-Protein Contacts for 248D
  • CSU: Contacts of Structural Units for 248D
  • Likely Quarternary Molecular Structure file(s) for 248D
  • Retrieve 248D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 248D from S2C, [Save to disk]
  • View 248D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 248D
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 248D, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [248d_A] [248d]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 248D
  • Community annotation for 248D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science