253D Dna date Mar 20, 1996
title Crystal Structure Of The B-Dna Nonamer D(Gcgtacgcg) With A N D[G(G.C)] Base-Triplet Involving The Minor Groove
authors B.H.M.Mooers, P.S.Ho
compound source
Molecule: Dna (5'-D(Gpcpgptpapcpgpcpg)-3')
Chain: A
Engineered: Yes
Synthetic: Yes
symmetry Space Group: P 42 21 2
R_factor 0.193 R_Free 0.214
crystal
cell
length a length b length c angle alpha angle beta angle gamma
38.915 38.915 33.026 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand MG enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (8 Kb) [Save to disk]
  • Biological Unit Coordinates (253d.pdb1.gz) 6 Kb
  • LPC: Ligand-Protein Contacts for 253D
  • CSU: Contacts of Structural Units for 253D
  • Likely Quarternary Molecular Structure file(s) for 253D
  • Retrieve 253D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 253D from S2C, [Save to disk]
  • View 253D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 253D
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 253D, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [253d] [253d_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 253D
  • Community annotation for 253D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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