264D Dna date Sep 22, 1994
title Three-Dimensional Crystal Structure Of The A-Tract Dna Dodec D(Cgcaaatttgcg) Complexed With The Minor-Groove-Binding Dru 33258
authors M.C.Vega, I.Garcia-Saez, J.Aymami, R.Eritja, G.A.Van Der Marel, J Boom, A.Rich, M.Coll
compound source
Molecule: Dna (5'-D(Cpgpcpapapaptptptpgpcpg)-3'
Chain: A, B
Engineered: Yes
 Synthetic: Yes
symmetry Space Group: P 21 21 21
R_factor 0.200 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
25.500 41.400 65.300 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.44 Å
ligand HT enzyme
Primary referenceThree-dimensional crystal structure of the A-tract DNA dodecamer d(CGCAAATTTGCG) complexed with the minor-groove-binding drug Hoechst 33258., Vega MC, Garcia Saez I, Aymami J, Eritja R, Van der Marel GA, Van Boom JH, Rich A, Coll M, Eur J Biochem. 1994 Jun 15;222(3):721-6. PMID:7517864
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (15 Kb) [Save to disk]
  • Biological Unit Coordinates (264d.pdb1.gz) 11 Kb
  • LPC: Ligand-Protein Contacts for 264D
  • CSU: Contacts of Structural Units for 264D
  • Likely Quarternary Molecular Structure file(s) for 264D
  • Retrieve 264D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 264D from S2C, [Save to disk]
    • View 264D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 264D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 264D, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [264d_A] [264d_B] [264d]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 264D
  • Community annotation for 264D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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