279D Dna date May 21, 1996
title Crystal Structure Of The Self-Complementary 5'-Purine Start D(Gcgcgcgcgc) In The Z-Dna Conformation-Part I
authors C.Ban, B.Ramakrishnan, M.Sundaralingam
compound source
Molecule: Dna (5'-D(Gpcpgpcpgpcpgpcpgpc)-3'
Chain: A

symmetry Space Group: P 65 2 2
R_factor 0.186 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
18.100 18.100 43.100 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.90 Å
Primary referenceCrystal structure of the self-complementary 5'-purine start decamer d(GCGCGCGCGC) in the Z-DNA conformation. I., Ban C, Ramakrishnan B, Sundaralingam M, Biophys J. 1996 Sep;71(3):1215-21. PMID:8873995
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (5 Kb) [Save to disk]
  • Biological Unit Coordinates (279d.pdb1.gz) 8 Kb
  • CSU: Contacts of Structural Units for 279D
  • Likely Quarternary Molecular Structure file(s) for 279D
  • Structure Factors (2 Kb)
  • Retrieve 279D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 279D from S2C, [Save to disk]
  • Re-refined 279d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 279D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 279D
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 279D, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [279d] [279d_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 279D
  • Community annotation for 279D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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