292D Dna date Oct 09, 1991
title Interaction Between The Left-Handed Z-Dna And Polyamine:The Structure Of The D(Cg)3 And N-(2-Aminoethyl)-1,4-Diaminobut Complex
authors H.Ohishi, S.Kunisawa, G.Van Der Marel, J.H.Van Boom, A.Rich, A.H. K.Tomita, T.Hakoshima
compound source
Molecule: Dna (5'-D(Cpgpcpgpcpg)-3')
Chain: A, B
Engineered: Yes
 Synthetic: Yes
symmetry Space Group: P 21 21 21
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
17.940 31.230 44.550 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.00 Å
ligand MG, NA, P24 enzyme
Primary referenceInteraction between the left-handed Z-DNA and polyamine. The crystal structure of the d(CG)3 and N-(2-aminoethyl)-1,4-diamino-butane complex., Ohishi H, Kunisawa S, van der Marel G, van Boom JH, Rich A, Wang AH, Tomita K, Hakoshima T, FEBS Lett 1991 Jun 24;284(2):238-44. PMID:2060642
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (12 Kb) [Save to disk]
  • Biological Unit Coordinates (292d.pdb1.gz) 7 Kb
  • LPC: Ligand-Protein Contacts for 292D
  • CSU: Contacts of Structural Units for 292D
  • Likely Quarternary Molecular Structure file(s) for 292D
  • Retrieve 292D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 292D from S2C, [Save to disk]
    • View 292D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 292D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 292D, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [292d_B] [292d_A] [292d]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 292D
  • Community annotation for 292D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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