2A5Z Crystal Structure of Protein of Unknown Function SO2946 from Shewanella oneidensis MR-1 date
authors Nocek, B., Bigelow, L., Abdullah, J., Collart, F., Joachimiak, A., MCSG, Midwest.Center.for.Structural.Genomics.
compound source
symmetry
R_factor
R_Free 0.20274
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.02
ligand MG, MSE enzyme
note 2A5Z is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceStructure of SO2946 orphan from Shewanella oneidensis shows "jelly-roll" fold with carbohydrate-binding module., Nocek B, Bigelow L, Abdullah J, Joachimiak A, J Struct Funct Genomics. 2008 Dec;9(1-4):1-6. Epub 2008 Jun 20. PMID:18566914
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (127 Kb) [Save to disk]
  • Biological Unit Coordinates (2a5z.pdb1.gz) 119 Kb
  • LPC: Ligand-Protein Contacts for 2A5Z
  • CSU: Contacts of Structural Units for 2A5Z
  • Likely Quarternary Molecular Structure file(s) for 2A5Z
  • Structure Factors (340 Kb)
  • Retrieve 2A5Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2A5Z from S2C, [Save to disk]
  • Re-refined 2a5z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2A5Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2A5Z
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2A5Z, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2a5z] [2a5z_C] [2a5z_B] [2a5z_A]
  • SWISS-PROT database: [Q8ED25]
  • Domain organization of [Q8ED25_SHEON] by SWISSPFAM
  • Other resources with information on 2A5Z
  • Community annotation for 2A5Z at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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