2A6A Crystal structure of Glycoprotein endopeptidase (tm0874) from THERMOTOGA MARITIMA at 2.50 A resolution date
authors JCSG, Joint.Center.for.Structural.Genomics.
compound source
symmetry
R_factor
R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
ligand MSE, UNL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of an essential bacterial protein YeaZ (TM0874) from Thermotoga maritima at 2.5 A resolution., Xu Q, McMullan D, Jaroszewski L, Krishna SS, Elsliger MA, Yeh AP, Abdubek P, Astakhova T, Axelrod HL, Carlton D, Chiu HJ, Clayton T, Duan L, Feuerhelm J, Grant J, Han GW, Jin KK, Klock HE, Knuth MW, Miller MD, Morse AT, Nigoghossian E, Okach L, Oommachen S, Paulsen J, Reyes R, Rife CL, van den Bedem H, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Oct 1;66(Pt, 10):1230-6. Epub 2009 Oct 27. PMID:20944216
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (2a6a.pdb1.gz) 58 Kb
  • Biological Unit Coordinates (2a6a.pdb2.gz) 114 Kb
  • Biological Unit Coordinates (2a6a.pdb3.gz) 114 Kb
  • LPC: Ligand-Protein Contacts for 2A6A
  • CSU: Contacts of Structural Units for 2A6A
  • Likely Quarternary Molecular Structure file(s) for 2A6A
  • Structure Factors (1764 Kb)
  • Retrieve 2A6A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2A6A from S2C, [Save to disk]
  • Re-refined 2a6a structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2A6A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2A6A
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2A6A, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2a6a_A] [2a6a] [2a6a_B]
  • SWISS-PROT database: [Q9WZX7]
  • Domain organization of [Q9WZX7_THEMA] by SWISSPFAM
  • Other resources with information on 2A6A
  • Community annotation for 2A6A at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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