2A6N Lyase date Jul 03, 2005
title Dihydrodipicolinate Synthase (E. Coli)- Mutant R138a
authors R.C.Dobson, S.R.Devenish, L.A.Turner, V.R.Clifford, F.G.Pearce, G.B.Jameson, J.A.Gerrard
compound source
Molecule: Dihydrodipicolinate Synthase
Chain: A, B
Synonym: Dhdps
Ec: 4.2.1.52
Engineered: Yes
Mutation: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Dapa
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 31 2 1
R_factor 0.163 R_Free 0.191
crystal
cell
length a length b length c angle alpha angle beta angle gamma
120.989 120.989 111.302 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.94 Å
ligand K enzyme Lyase E.C.4.2.1.52 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceRole of Arginine 138 in the Catalysis and Regulation of Escherichia coli Dihydrodipicolinate Synthase., Dobson RC, Devenish SR, Turner LA, Clifford VR, Pearce FG, Jameson GB, Gerrard JA, Biochemistry 2005 Oct 4;44(39):13007-13. PMID:16185069
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk]
  • Biological Unit Coordinates (2a6n.pdb1.gz) 189 Kb
  • LPC: Ligand-Protein Contacts for 2A6N
  • CSU: Contacts of Structural Units for 2A6N
  • Likely Quarternary Molecular Structure file(s) for 2A6N
  • Structure Factors (503 Kb)
  • Retrieve 2A6N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2A6N from S2C, [Save to disk]
  • Re-refined 2a6n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2A6N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2A6N
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2A6N, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2a6n_A] [2a6n_B] [2a6n]
  • SWISS-PROT database: [P0A6L2]
  • Domain organization of [DAPA_ECOLI] by SWISSPFAM
  • Domain found in 2A6N: [DHDPS ] by SMART
  • Other resources with information on 2A6N
  • Community annotation for 2A6N at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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