2A79 Membrane Protein date Jul 05, 2005
title Mammalian Shaker Kv1.2 Potassium Channel- Beta Subunit Compl
authors S.B.Long, E.B.Campbell, R.Mackinnon
compound source
Molecule: Voltage-Gated Potassium Channel Beta-2 Subunit
Chain: A
Synonym: K+, Channel Beta-2 Subunit, Kv-Beta-2
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Gene: Kcnab2, Ckbeta2, Kcnb3
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922

Molecule: Potassium Voltage-Gated Channel Subfamily A Membe
Chain: B
Synonym: Voltage-Gated Potassium Channel Subunit Kv1.2, Rbk Rak;
Engineered: Yes

Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Gene: Kcna2
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922

Molecule: Poly-Unknown Chain
Chain: C
Fragment: T1-S1 Linker And S1 Helix Of The Kv1.2 Channel
Engineered: Yes
Other_details: Chain C Consists Of A Polyglycine Model For Linker And A Polyalanine Model For The S1 Helix Of Kv1.2.;

Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Gene: Kcna2
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922

Molecule: Poly-Unknown Chain
Chain: D
Fragment: S3 Helix Of The Kv1.2 Channel
Engineered: Yes
Other_details: Chain D Consists Of A Polyalanine Model For Helix Of Kv1.2.

Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Gene: Kcna2
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
symmetry Space Group: I 4
R_factor 0.222 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
113.605 113.605 260.473 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand K, NAP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • voltage-gated ion channel ac...
  • voltage-gated potassium chan...


  • B


    Primary referenceCrystal structure of a mammalian voltage-dependent Shaker family K+ channel., Long SB, Campbell EB, Mackinnon R, Science 2005 Aug 5;309(5736):897-903. Epub 2005 Jul 7. PMID:16002581
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]
  • Biological Unit Coordinates (2a79.pdb1.gz) 391 Kb
  • LPC: Ligand-Protein Contacts for 2A79
  • CSU: Contacts of Structural Units for 2A79
  • Likely Quarternary Molecular Structure file(s) for 2A79
  • Structure Factors (315 Kb)
  • Retrieve 2A79 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2A79 from S2C, [Save to disk]
  • Re-refined 2a79 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2A79 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2A79
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2A79, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2a79_B] [2a79] [2a79_D] [2a79_C] [2a79_A]
  • SWISS-PROT database: [P62483] [P63142]
  • Domain organization of [KCAB2_RAT] [KCNA2_RAT] by SWISSPFAM
  • Domain found in 2A79: [BTB ] by SMART
  • Other resources with information on 2A79
  • Community annotation for 2A79 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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