2A7L Ligase date Jul 05, 2005
title Structure Of The Human Hypothetical Ubiquitin-Conjugating En Loc55284
authors J.R.Walker, G.V.Avvakumov, S.Xue, E.M.Newman, F.Mackenzie, J.Weig M.Sundstrom, C.Arrowsmith, A.Edwards, A.Bochkarev, S.Dhe-Pagano Structural Genomics Consortium (Sgc)
compound source
Molecule: Hypothetical Ubiquitin-Conjugating Enzyme Loc5528
Chain: A, B
Ec: 6.3.2.19
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Flj11011
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28-Lic
symmetry Space Group: P 21 21 2
R_factor 0.262 R_Free 0.300
crystal
cell
length a length b length c angle alpha angle beta angle gamma
38.595 60.655 133.520 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.82 Å
ligand NA enzyme Ligase E.C.6.3.2.19 BRENDA
Primary referenceA human ubiquitin conjugating enzyme (E2)-HECT E3 ligase structure-function screen., Sheng Y, Hong JH, Doherty R, Srikumar T, Shloush J, Avvakumov GV, Walker JR, Xue S, Neculai D, Wan JW, Kim SK, Arrowsmith CH, Raught B, Dhe-Paganon S, Mol Cell Proteomics. 2012 Aug;11(8):329-41. Epub 2012 Apr 10. PMID:22496338
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (2a7l.pdb1.gz) 22 Kb
  • Biological Unit Coordinates (2a7l.pdb2.gz) 22 Kb
  • LPC: Ligand-Protein Contacts for 2A7L
  • CSU: Contacts of Structural Units for 2A7L
  • Likely Quarternary Molecular Structure file(s) for 2A7L
  • Structure Factors (197 Kb)
  • Retrieve 2A7L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2A7L from S2C, [Save to disk]
  • Re-refined 2a7l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2A7L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2A7L
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2A7L, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2a7l_A] [2a7l] [2a7l_B]
  • SWISS-PROT database: [Q96B02]
  • Domain organization of [UBE2W_HUMAN] by SWISSPFAM
  • Domain found in 2A7L: [UBCc ] by SMART
    • Other resources with information on 2A7L
  • Community annotation for 2A7L at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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