2A7P Oxidoreductase date Jul 05, 2005
title Crystal Structure Of The G81a Mutant Of The Active Chimera O Mandelate Dehydrogenase In Complex With Its Substrate 3-Ind
authors N.Sukumar, Y.Xu, B.Mitra, F.S.Mathews
compound source
Molecule: (S)-Mandelate Dehydrogenase
Chain: A
Ec: 1.-.-.-
Engineered: Yes
Mutation: Yes
Organism_scientific: Pseudomonas Putida, Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 303, 3562
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 4
R_factor 0.198 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
99.400 99.400 87.600 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand 3IL, FMN, MES enzyme Oxidoreductase E.C.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructures of the G81A mutant form of the active chimera of (S)-mandelate dehydrogenase and its complex with two of its substrates., Sukumar N, Dewanti A, Merli A, Rossi GL, Mitra B, Mathews FS, Acta Crystallogr D Biol Crystallogr. 2009 Jun;65(Pt 6):543-52. Epub 2009, May 15. PMID:19465768
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (2a7p.pdb1.gz) 238 Kb
  • LPC: Ligand-Protein Contacts for 2A7P
  • CSU: Contacts of Structural Units for 2A7P
  • Likely Quarternary Molecular Structure file(s) for 2A7P
  • Structure Factors (322 Kb)
  • Retrieve 2A7P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2A7P from S2C, [Save to disk]
  • Re-refined 2a7p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2A7P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2A7P
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2A7P, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2a7p] [2a7p_A]
  • SWISS-PROT database: [P05414] [P20932]
  • Domain organization of [GOX_SPIOL] [MDLB_PSEPU] by SWISSPFAM
  • Other resources with information on 2A7P
  • Community annotation for 2A7P at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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