2A7S Ligase date Jul 06, 2005
title Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From Mycobacterium Tuberculosis
authors T.Lin, M.Melgar, J.Purdon, T.Tseng, S.C.Tsai
compound source
Molecule: Probable Propionyl-Coa Carboxylase Beta Chain 5
Chain: A, B, C, D, E, F
Synonym: Pccase, Propanoyl-Coa:Carbon Dioxide Ligase
Ec: 6.4.1.3
Engineered: Yes
Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 1773
Gene: Accd5, Pccb
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21de3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28
symmetry Space Group: P 41 21 2
R_factor 0.193 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
175.252 175.252 342.999 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand
enzyme Ligase E.C.6.4.1.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceStructure-based inhibitor design of AccD5, an essential acyl-CoA carboxylase carboxyltransferase domain of Mycobacterium tuberculosis., Lin TW, Melgar MM, Kurth D, Swamidass SJ, Purdon J, Tseng T, Gago G, Baldi P, Gramajo H, Tsai SC, Proc Natl Acad Sci U S A. 2006 Feb 28;103(9):3072-7. Epub 2006 Feb 21. PMID:16492739
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (505 Kb) [Save to disk]
  • Biological Unit Coordinates (2a7s.pdb1.gz) 500 Kb
  • CSU: Contacts of Structural Units for 2A7S
  • Likely Quarternary Molecular Structure file(s) for 2A7S
  • Structure Factors (720 Kb)
  • Retrieve 2A7S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2A7S from S2C, [Save to disk]
  • Re-refined 2a7s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2A7S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2A7S
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2A7S, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2a7s] [2a7s_D] [2a7s_F] [2a7s_E] [2a7s_C] [2a7s_B] [2a7s_A]
  • SWISS-PROT database: [P96885]
  • Domain organization of [PCC5_MYCTU] by SWISSPFAM
  • Other resources with information on 2A7S
  • Community annotation for 2A7S at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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