2ABZ Hydrolase Hydrolase Inhibitor date Jul 18, 2005
title Crystal Structure Of C19ac43a Mutant Of Leech Carboxypeptid Inhibitor In Complex With Bovine Carboxypeptidase A
authors J.L.Arolas, G.M.Popowicz, S.Bronsoms, F.X.Aviles, R.Huber, T.A.Ho S.Ventura
compound source
Molecule: Carboxypeptidase A1
Chain: A, B
Synonym: Carboxypeptidase A, Cpa, Ab Metallocarboxypeptida
Ec: 3.4.17.1
Engineered: Yes
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
Expression_system_strain: Km71
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ppic9

Molecule: Metallocarboxypeptidase Inhibitor
Chain: C, D, E, F
Synonym: Leech Carboxypeptidase Inhibitor, Lci, Inhibitor O Metallocarboxypeptidases;
Engineered: Yes
Mutation: Yes

Organism_scientific: Hirudo Medicinalis
Organism_common: Medicinal Leech
Organism_taxid: 6421
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pbat4
symmetry Space Group: P 43 21 2
R_factor 0.189 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
124.930 124.930 154.980 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.16 Å
ligand ZN enzyme Hydrolase E.C.3.4.17.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


F, D, C, E
  • metalloendopeptidase inhibit...


  • Primary referenceStudy of a major intermediate in the oxidative folding of leech carboxypeptidase inhibitor: contribution of the fourth disulfide bond., Arolas JL, Popowicz GM, Bronsoms S, Aviles FX, Huber R, Holak TA, Ventura S, J Mol Biol 2005 Sep 30;352(4):961-75. PMID:16126224
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (135 Kb) [Save to disk]
  • Biological Unit Coordinates (2abz.pdb1.gz) 127 Kb
  • LPC: Ligand-Protein Contacts for 2ABZ
  • CSU: Contacts of Structural Units for 2ABZ
  • Likely Quarternary Molecular Structure file(s) for 2ABZ
  • Structure Factors (529 Kb)
  • Retrieve 2ABZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ABZ from S2C, [Save to disk]
  • Re-refined 2abz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2ABZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ABZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ABZ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2abz] [2abz_C] [2abz_B] [2abz_D] [2abz_A] [2abz_E] [2abz_F]
  • SWISS-PROT database: [P00730] [P81511]
  • Domain organization of [CBPA1_BOVIN] [MCPI_HIRME] by SWISSPFAM
  • Domain found in 2ABZ: [Zn_pept ] by SMART
  • Other resources with information on 2ABZ
  • Community annotation for 2ABZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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