2ADJ Immune System date Jul 20, 2005
title Crystal Structure Of Monoclonal Anti-Cd4 Antibody Q425 In Co Calcium
authors T.Zhou, D.H.Hamer, W.A.Hendrickson, Q.J.Sattentau, P.D.Kwong
compound source
Molecule: Q425 Fab Light Chain
Chain: A
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Other_details: Hydridoma

Molecule: Q425 Fab Heavy Chain
Chain: B

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Other_details: Hydridoma
symmetry Space Group: P 43 21 2
R_factor 0.213 R_Free 0.300
crystal
cell
length a length b length c angle alpha angle beta angle gamma
97.224 97.224 110.976 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand CA enzyme
Primary referenceInterfacial metal and antibody recognition., Zhou T, Hamer DH, Hendrickson WA, Sattentau QJ, Kwong PD, Proc Natl Acad Sci U S A 2005 Oct 11;102(41):14575-80. Epub 2005 Sep 29. PMID:16195378
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (2adj.pdb1.gz) 66 Kb
  • LPC: Ligand-Protein Contacts for 2ADJ
  • CSU: Contacts of Structural Units for 2ADJ
  • Likely Quarternary Molecular Structure file(s) for 2ADJ
  • Structure Factors (101 Kb)
  • Retrieve 2ADJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ADJ from S2C, [Save to disk]
  • Re-refined 2adj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2ADJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ADJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ADJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2adj_B] [2adj] [2adj_A]
  • SWISS-PROT database: [P01837]
  • Domain organization of [IGKC_MOUSE] by SWISSPFAM
  • Domains found in 2ADJ: [IG_like] [IGv ] by SMART
  • Other resources with information on 2ADJ
  • Community annotation for 2ADJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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