2ADP Oxidoreductase date Jul 20, 2005
title Nitrated Human Manganese Superoxide Dismutase
authors P.Quint, R.Reutzel, R.Mikulski, R.Mckenna, D.N.Silverman
compound source
Molecule: Superoxide Dismutase [Mn]
Chain: A
Ec: 1.15.1.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sod2
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet
symmetry Space Group: P 61 2 2
R_factor 0.197 R_Free 0.218
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.270 81.270 242.181 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.40 Å
ligand K, MN, NIY enzyme Oxidoreductase E.C.1.15.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of nitrated human manganese superoxide dismutase: mechanism of inactivation., Quint P, Reutzel R, Mikulski R, McKenna R, Silverman DN, Free Radic Biol Med. 2006 Feb 1;40(3):453-8. Epub 2005 Nov 9. PMID:16443160
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (2adp.pdb1.gz) 65 Kb
  • LPC: Ligand-Protein Contacts for 2ADP
  • CSU: Contacts of Structural Units for 2ADP
  • Likely Quarternary Molecular Structure file(s) for 2ADP
  • Retrieve 2ADP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ADP from S2C, [Save to disk]
  • View 2ADP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ADP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ADP, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2adp] [2adp_A]
  • SWISS-PROT database: [P04179]
  • Domain organization of [SODM_HUMAN] by SWISSPFAM
  • Other resources with information on 2ADP
  • Community annotation for 2ADP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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