2ADX Blood Coagulation date Feb 18, 1997
title Fifth Egf-Like Domain Of Thrombomodulin (Tmegf5), Nmr, Minim Average Structure
authors B.A.Sampoli-Benitez, M.J.Hunter, D.P.Meininger, E.A.Komives
compound source
Molecule: Thrombomodulin
Chain: A
Fragment: Fifth Egf-Like Domain
Synonym: Tmegf5
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Blood
methodSolution NMR
related structures by homologous chain: 1DQB
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of the fifth EGF-like domain of thrombomodulin: An EGF-like domain with a novel disulfide-bonding pattern., Sampoli Benitez BA, Hunter MJ, Meininger DP, Komives EA, J Mol Biol 1997 Nov 7;273(4):913-26. PMID:9367781
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (13 Kb) [Save to disk]
  • Biological Unit Coordinates (2adx.pdb1.gz) 11 Kb
  • CSU: Contacts of Structural Units for 2ADX
  • Retrieve 2ADX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ADX from S2C, [Save to disk]
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  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2ADX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ADX, from MSDmotif at EBI
  • Genome occurence of 2ADX's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2adx__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2adx_A] [2adx]
  • SWISS-PROT database: [P07204]
  • Domain organization of [TRBM_HUMAN] by SWISSPFAM
  • Domain found in 2ADX: [EGF ] by SMART
    • Other resources with information on 2ADX
  • Community annotation for 2ADX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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