2AF8 Antibiotic Biosynthesis date Mar 23, 1997
title Actinorhodin Polyketide Synthase Acyl Carrier Protein From Streptomyces Coelicolor A3(2), Nmr, Minimized Average Struc
authors M.P.Crump, J.Crosby, C.E.Dempsey, J.A.Parkinson, M.Murray, D.A.Ho T.J.Simpson
compound source
Molecule: Actinorhodin Polyketide Synthase Acyl Carrier Pro
Chain: A
Synonym: Act Acp, Acti Orf3
Engineered: Yes
 Organism_scientific: Streptomyces Coelicolor
Organism_taxid: 100226
Strain: A3(2)
Gene: Actinorhodin Acyl Carrier Protein
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: K38
Expression_system_vector_type: Virus
Expression_system_vector: Pt7-7
Expression_system_plasmid: Pgp1-2
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of the actinorhodin polyketide synthase acyl carrier protein from Streptomyces coelicolor A3(2)., Crump MP, Crosby J, Dempsey CE, Parkinson JA, Murray M, Hopwood DA, Simpson TJ, Biochemistry 1997 May 20;36(20):6000-8. PMID:9166770
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk]
  • Biological Unit Coordinates (2af8.pdb1.gz) 24 Kb
  • CSU: Contacts of Structural Units for 2AF8
  • Retrieve 2AF8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2AF8 from S2C, [Save to disk]
    • View 2AF8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2AF8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2AF8, from MSDmotif at EBI
  • Genome occurence of 2AF8's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2af8__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2af8] [2af8_A]
  • SWISS-PROT database: [Q02054]
  • Domain organization of [ACPX_STRCO] by SWISSPFAM
    • Other resources with information on 2AF8
  • Community annotation for 2AF8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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