2AG1 Lyase date Jul 26, 2005
title Crystal Structure Of Benzaldehyde Lyase (Bal)- Semet
authors T.G.Mosbacher, M.Mueller, G.E.Schulz
compound source
Molecule: Benzaldehyde Lyase
Chain: A, B, C, D
Ec: 4.1.2.38
Engineered: Yes
Organism_scientific: Pseudomonas Fluorescens
Organism_taxid: 294
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Sg13009 Prep4
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Puc18
symmetry Space Group: P 31 2 1
R_factor 0.212 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
150.165 150.165 195.607 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.58 Å
ligand MG, MSE, TPP enzyme Lyase E.C.4.1.2.38 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructure and mechanism of the ThDP-dependent benzaldehyde lyase from Pseudomonas fluorescens., Mosbacher TG, Mueller M, Schulz GE, FEBS J. 2005 Dec;272(23):6067-76. PMID:16302970
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (704 Kb) [Save to disk]
  • Biological Unit Coordinates (2ag1.pdb1.gz) 692 Kb
  • LPC: Ligand-Protein Contacts for 2AG1
  • CSU: Contacts of Structural Units for 2AG1
  • Likely Quarternary Molecular Structure file(s) for 2AG1
  • Structure Factors (510 Kb)
  • Retrieve 2AG1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2AG1 from S2C, [Save to disk]
  • Re-refined 2ag1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2AG1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2AG1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2AG1, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ag1_B] [2ag1_C] [2ag1_D] [2ag1_A] [2ag1]
  • SWISS-PROT database: [Q9F4L3]
  • Domain organization of [Q9F4L3_PSEFL] by SWISSPFAM
  • Other resources with information on 2AG1
  • Community annotation for 2AG1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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