2AIA Hydrolase date Jul 29, 2005
title S.Pneumoniae Pdf Complexed With Sb-543668
authors K.J.Smith, C.M.Petit, K.Aubart, M.Smyth, E.Mcmanus, J.Jones, A.Fos C.Lewis, M.Lonetto, S.B.Christensen
compound source
Molecule: Peptide Deformylase
Chain: A
Synonym: Pdf, Polypeptide Deformylase
Ec: 3.5.1.88
Engineered: Yes
Organism_scientific: Streptococcus Pneumoniae
Organism_taxid: 1313
Strain: Atcc Baa-255-R6
Gene: Def
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43
R_factor 0.235 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.701 49.701 91.835 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand NI, SB8, SO4 BindingDB enzyme Hydrolase E.C.3.5.1.88 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural variation and inhibitor binding in polypeptide deformylase from four different bacterial species., Smith KJ, Petit CM, Aubart K, Smyth M, McManus E, Jones J, Fosberry A, Lewis C, Lonetto M, Christensen SB, Protein Sci 2003 Feb;12(2):349-60. PMID:12538898
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (2aia.pdb1.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 2AIA
  • CSU: Contacts of Structural Units for 2AIA
  • Likely Quarternary Molecular Structure file(s) for 2AIA
  • Structure Factors (203 Kb)
  • Retrieve 2AIA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2AIA from S2C, [Save to disk]
  • Re-refined 2aia structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2AIA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2AIA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2AIA, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2aia] [2aia_A]
  • SWISS-PROT database: [Q8DP79]
  • Domain organization of [DEF_STRR6] by SWISSPFAM
  • Other resources with information on 2AIA
  • Community annotation for 2AIA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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