2AIF Dna Binding Protein, Cytokine date Jul 29, 2005
title Crystal Structure Of High Mobility Like Protein, Nhp2, Putat Cryptosporidium Parvum
authors A.Dong, Y.Zhao, J.Lew, Z.Alam, M.Melone, C.H.Arrowsmith, A.M.Edwar J.Weigelt, M.Sundstrom, R.Hui, A.Bochkarev, J.Artz, Structural G Consortium (Sgc)
compound source
Molecule: Ribosomal Protein L7a
Chain: A
Engineered: Yes
 Organism_scientific: Cryptosporidium Parvum
Organism_taxid: 5807
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet28
symmetry Space Group: H 3
R_factor 0.198 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.703 90.703 31.275 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.90 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceGenome-scale protein expression and structural biology of Plasmodium falciparum and related Apicomplexan organisms., Vedadi M, Lew J, Artz J, Amani M, Zhao Y, Dong A, Wasney GA, Gao M, Hills T, Brokx S, Qiu W, Sharma S, Diassiti A, Alam Z, Melone M, Mulichak A, Wernimont A, Bray J, Loppnau P, Plotnikova O, Newberry K, Sundararajan E, Houston S, Walker J, Tempel W, Bochkarev A, Kozieradzki I, Edwards A, Arrowsmith C, Roos D, Kain K, Hui R, Mol Biochem Parasitol. 2007 Jan;151(1):100-10. Epub 2006 Nov 13. PMID:17125854
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (23 Kb) [Save to disk]
  • Biological Unit Coordinates (2aif.pdb1.gz) 19 Kb
  • CSU: Contacts of Structural Units for 2AIF
  • Likely Quarternary Molecular Structure file(s) for 2AIF
  • Structure Factors (55 Kb)
  • Retrieve 2AIF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2AIF from S2C, [Save to disk]
  • Re-refined 2aif structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2AIF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2AIF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2AIF, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2aif] [2aif_A]
  • SWISS-PROT database: [Q7YYQ3]
  • Domain organization of [Q7YYQ3_CRYPV] by SWISSPFAM
    • Other resources with information on 2AIF
  • Community annotation for 2AIF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science