2AIZ Membrane Protein date Aug 01, 2005
title Solution Structure Of Peptidoglycan Associated Lipoprotein F Haemophilus Influenza Bound To Udp-N-Acetylmuramoyl-L-Alany Glutamyl-Meso-2,6-Diaminopimeloyl-D-Alanyl-D-Alanine
authors L.M.Parsons, F.Lin, J.Orban, Structure 2 Function Project (S2f)
compound source
Molecule: Outer Membrane Protein P6 (Fragment)
Chain: P
Engineered: Yes
Organism_scientific: Haemophilus Influenzae
Organism_taxid: 727
Gene: Ompp6
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28

Molecule: L-Alanyl-D-Glutamyl-Meso-2,6-Diaminopimeloyl-D-Al Alanine;
Chain: U
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
methodSolution NMR
ligand 6CL, AMU, DAL, DGL, UDP enzyme
Gene
Ontology
ChainFunctionProcessComponent
P


Primary referencePeptidoglycan recognition by pal, an outer membrane lipoprotein(,)., Parsons LM, Lin F, Orban J, Biochemistry. 2006 Feb 21;45(7):2122-8. PMID:16475801
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (693 Kb) [Save to disk]
  • Biological Unit Coordinates (2aiz.pdb1.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 2AIZ
  • CSU: Contacts of Structural Units for 2AIZ
  • Retrieve 2AIZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2AIZ from S2C, [Save to disk]
  • View 2AIZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2AIZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2AIZ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2aiz] [2aiz_P] [2aiz_U]
  • SWISS-PROT database: [P10324]
  • Domain organization of [PAL_HAEIN] by SWISSPFAM
  • Other resources with information on 2AIZ
  • Community annotation for 2AIZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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