2AJO Membrane Protein date Aug 02, 2005
title Nmr Structure Of The In-Plane Membrane Anchor Domain [1-28] Monotopic Nonstructural Protein 5a (Ns5a) From The Bovine V Diarrhea Virus (Bvdv)
authors N.Sapay, R.Montserret, C.Chipot, V.Brass, D.Moradpour, G.Deleage,
compound source
Molecule: Nonstructural Protein 5a
Chain: A
Fragment: Bvdv Ns5a
Synonym: Ns5a
Engineered: Yes
Synthetic: Yes
Other_details: The Peptide Was Chemically Synthesized. The Is Naturally Found In Bovine Viral Diarrhea Virus 1, Strain
methodSolution NMR
Primary referenceNMR structure and molecular dynamics of the in-plane membrane anchor of nonstructural protein 5A from bovine viral diarrhea virus., Sapay N, Montserret R, Chipot C, Brass V, Moradpour D, Deleage G, Penin F, Biochemistry. 2006 Feb 21;45(7):2221-33. PMID:16475810
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (10 Kb) [Save to disk]
  • Biological Unit Coordinates (2ajo.pdb1.gz) 8 Kb
  • CSU: Contacts of Structural Units for 2AJO
  • Original NMR restraints for 2AJO from PDB
  • Retrieve 2AJO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2AJO from S2C, [Save to disk]
  • View 2AJO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2AJO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2AJO, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ajo_A] [2ajo]
  • SWISS-PROT database: [Q96662]
  • Belongs to the hepatitis c virus p7 viroporin cation-selective channel (hcv-p7) family according to TCDB.
  • Domain organization of [POLG_BVDVC] by SWISSPFAM
  • Other resources with information on 2AJO
  • Community annotation for 2AJO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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