2AKO Transferase date Aug 03, 2005
title Crystal Structure Of Glutamate 5-Kinase From Campylobacter J
authors J.Gorman, L.Shapiro, S.K.Burley, New York Sgx Research Center F Structural Genomics (Nysgxrc)
compound source
Molecule: Glutamate 5-Kinase
Chain: A, B, C, D
Synonym: Gamma-Glutamyl Kinase, Gk
Ec: 2.7.2.11
Engineered: Yes
Organism_scientific: Campylobacter Jejuni
Organism_taxid: 197
Gene: Prob
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Modified Pet
symmetry Space Group: P 21 21 21
R_factor 0.178 R_Free 0.221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
98.597 99.409 124.547 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand ADP, MSE enzyme Transferase E.C.2.7.2.11 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (175 Kb) [Save to disk]
  • Biological Unit Coordinates (2ako.pdb1.gz) 85 Kb
  • Biological Unit Coordinates (2ako.pdb2.gz) 84 Kb
  • LPC: Ligand-Protein Contacts for 2AKO
  • CSU: Contacts of Structural Units for 2AKO
  • Likely Quarternary Molecular Structure file(s) for 2AKO
  • Structure Factors (487 Kb)
  • Retrieve 2AKO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2AKO from S2C, [Save to disk]
  • Re-refined 2ako structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2AKO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2AKO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2AKO, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ako_D] [2ako_C] [2ako_A] [2ako_B] [2ako]
  • SWISS-PROT database: [Q9PJ29]
  • Domain organization of [PROB_CAMJE] by SWISSPFAM
  • Other resources with information on 2AKO
  • Community annotation for 2AKO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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