2ANJ Membrane Protein date Aug 11, 2005
title Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j-Y4 Mutant In Complex With The Partial Agonist Kainic Acid At 2 Resolution
authors M.M.Holm, P.Naur, B.Vestergaard, M.T.Geballe, M.Gajhede, J.S.Kast S.F.Traynelis, J.Egebjerg
compound source
Molecule: Glutamate Receptor 2
Chain: A
Fragment: Ligand Binding Core
Synonym: Glur-2, Glur-B, Glur-K2, Glutamate Receptor Ionotr 2;
Engineered: Yes
Mutation: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Gene: Gria2, Glur2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petgq
symmetry Space Group: P 21 21 2
R_factor 0.187 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
95.254 61.635 48.751 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand KAI BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA binding site tyrosine shapes desensitization kinetics and agonist potency at GluR2. A mutagenic, kinetic, and crystallographic study., Holm MM, Naur P, Vestergaard B, Geballe MT, Gajhede M, Kastrup JS, Traynelis SF, Egebjerg J, J Biol Chem 2005 Oct 21;280(42):35469-76. Epub 2005 Aug 15. PMID:16103115
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (2anj.pdb1.gz) 91 Kb
  • LPC: Ligand-Protein Contacts for 2ANJ
  • CSU: Contacts of Structural Units for 2ANJ
  • Likely Quarternary Molecular Structure file(s) for 2ANJ
  • Structure Factors (235 Kb)
  • Retrieve 2ANJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ANJ from S2C, [Save to disk]
  • Re-refined 2anj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2ANJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ANJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ANJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2anj] [2anj_A]
  • SWISS-PROT database: [P19491]
  • Domain organization of [GRIA2_RAT] by SWISSPFAM
  • Domains found in 2ANJ: [Lig_chan-Glu_bd] [PBPb] [PBPe ] by SMART
  • Other resources with information on 2ANJ
  • Community annotation for 2ANJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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