2AO6 Transcription date Aug 12, 2005
title Crystal Structure Of The Human Androgen Receptor Ligand Bind Bound With Tif2(III) 740-753 Peptide And R1881
authors B.He, R.T.Gampe Jr., A.J.Kole, A.T.Hnat, T.B.Stanley, G.An, E.L.St R.I.Kalman, J.T.Minges, E.M.Wilson
compound source
Molecule: Androgen Receptor
Chain: A
Fragment: Ligand Binding Domain
Synonym: Dihydrotestosterone Receptor
Engineered: Yes
Other_details: Inhibited By R1881
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ar, Nr3c4
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21de3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
Other_details: Human Ar Lbd (663-919) With Thrombin Cleavab Terminal His Tag;

Molecule: 14-Mer Fragment Of Nuclear Receptor Coactivator 2
Chain: B
Fragment: Box 3, Residues 740-753
Synonym: Ncoa-2; Transcriptional Intermediary Factor 2
Engineered: Yes

Synthetic: Yes
Other_details: 14-Mer Fragment Of Transcriptional Intermedi Factor 2, Residues 740-753
symmetry Space Group: P 21 21 21
R_factor 0.220 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.580 66.700 69.400 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.89 Å
ligand R18 BindingDB enzyme
note 2AO6 supersedes 1XQ2
Primary referenceStructural basis for androgen receptor interdomain and coactivator interactions suggests a transition in nuclear receptor activation function dominance., He B, Gampe RT Jr, Kole AJ, Hnat AT, Stanley TB, An G, Stewart EL, Kalman RI, Minges JT, Wilson EM, Mol Cell 2004 Nov 5;16(3):425-38. PMID:15525515
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (2ao6.pdb1.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 2AO6
  • CSU: Contacts of Structural Units for 2AO6
  • Likely Quarternary Molecular Structure file(s) for 2AO6
  • Structure Factors (198 Kb)
  • Retrieve 2AO6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2AO6 from S2C, [Save to disk]
  • Re-refined 2ao6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2AO6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2AO6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2AO6, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ao6_B] [2ao6_A] [2ao6]
  • SWISS-PROT database: [P10275] [Q15596]
  • Domain organization of [ANDR_HUMAN] [NCOA2_HUMAN] by SWISSPFAM
  • Domain found in 2AO6: [HOLI ] by SMART
  • Other resources with information on 2AO6
  • Community annotation for 2AO6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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