2AOG	Hydrolase Hydrolase Inhibitor	date	Aug 12, 2005
title	Crystal Structure Analysis Of Hiv-1 Protease Mutant V82a Wit Substrate Analog P2-Nc
authors	Y.Tie, P.I.Boross, Y.F.Wang, L.Gaddis, F.Liu, X.Chen, J.Tozser, R.W.Harrison, I.T.Weber
compound		source
Molecule: Hiv-1 Protease (Retropepsin) Chain: A, B Synonym: Retropepsin Ec: 3.4.23.16 Engineered: Yes Mutation: Yes		Organism_scientific: Human Immunodeficiency Virus Type 1 (B Isolate); Organism_taxid: 11682 Strain: Bh5 Isolate Gene: Pol Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet11a
symmetry	Space Group: P 21 21 2	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 58.020 85.893 46.614 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.10 Å
ligand	2NC, ACY, GOL, UNX	enzyme	Hydrolase E.C.3.4.23.16 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Molecular basis for substrate recognition and drug resistance from 1.1 to 1.6 angstroms resolution crystal structures of HIV-1 protease mutants with substrate analogs., Tie Y, Boross PI, Wang YF, Gaddis L, Liu F, Chen X, Tozser J, Harrison RW, Weber IT, FEBS J. 2005 Oct;272(20):5265-77. PMID:16218957

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk] Biological Unit Coordinates (2aog.pdb1.gz) 84 Kb LPC: Ligand-Protein Contacts for 2AOG CSU: Contacts of Structural Units for 2AOG Likely Quarternary Molecular Structure file(s) for 2AOG Structure Factors (837 Kb) Retrieve 2AOG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2AOG from S2C, [Save to disk] Re-refined 2aog structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2AOG in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2AOG

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2AOG, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2aog] [2aog_C] [2aog_A] [2aog_B] SWISS-PROT database: [P04587] Domain organization of [POL_HV1B5] by SWISSPFAM

Other resources with information on 2AOG

Community annotation for 2AOG at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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