2AP9 Signaling Protein,Transferase date Aug 15, 2005
title Crystal Structure Of Acetylglutamate Kinase From Mycobacteri Tuberculosis Cdc1551
authors K.R.Rajashankar, R.Kniewel, K.Lee, C.D.Lima, S.K.Burley, New York Research Center For Structural Genomics (Nysgxrc)
compound source
Molecule: Acetylglutamate Kinase
Chain: A, B, C, D, E, F
Fragment: Acetylglutamate Kinase
Synonym: Nag Kinase; Agk; N-Acetyl-L-Glutamate 5-Phosphotra
Ec: 2.7.2.8
Engineered: Yes
Mutation: Yes
Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 83331
Strain: Cdc1551
Gene: Argb, Rv1654, Mt1692
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834, De3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet T7
symmetry Space Group: P 21 21 21
R_factor 0.258 R_Free 0.284
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.024 122.996 194.581 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand MG, MSE, NI enzyme Transferase E.C.2.7.2.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (272 Kb) [Save to disk]
  • Biological Unit Coordinates (2ap9.pdb1.gz) 263 Kb
  • LPC: Ligand-Protein Contacts for 2AP9
  • CSU: Contacts of Structural Units for 2AP9
  • Likely Quarternary Molecular Structure file(s) for 2AP9
  • Structure Factors (1226 Kb)
  • Retrieve 2AP9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2AP9 from S2C, [Save to disk]
  • Re-refined 2ap9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2AP9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2AP9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2AP9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ap9_A] [2ap9] [2ap9_D] [2ap9_F] [2ap9_E] [2ap9_B] [2ap9_C]
  • SWISS-PROT database: [P0A4Y6]
  • Domain organization of [ARGB_MYCTU] by SWISSPFAM
  • Other resources with information on 2AP9
  • Community annotation for 2AP9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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