4L05 Cu/Zn superoxide dismutase from Brucella abortus date 2013-05-30
authors Shin, D.S., Didonato, M., Pratt, A.J., Bruns, C.K., Cabelli, D.E., Kroll, J.S., Belzer, C.A., Tabatabai, L.B., Tainer, J.A., Getzoff, E.D.
compound source
symmetry
R_factor
R_Free 0.1183
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.10
ligand CU, CU1, GOL, SO4, ZN enzyme
note 4L05 supersedes 2AQM
Gene BRUAB2
Gene
Ontology
ChainFunctionProcessComponent
A
  • superoxide dismutase activit...
  • antioxidant activity


    • Primary referenceStructural, Functional, and Immunogenic Insights on Cu,Zn Superoxide Dismutase Pathogenic Virulence Factors from Neisseria meningitidis and Brucella abortus., Pratt AJ, DiDonato M, Shin DS, Cabelli DE, Bruns CK, Belzer CA, Gorringe AR, Langford PR, Tabatabai LB, Kroll JS, Tainer JA, Getzoff ED, J Bacteriol. 2015 Dec 15;197(24):3834-47. doi: 10.1128/JB.00343-15. Epub 2015 Oct, 12. PMID:26459556
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (4l05.pdb1.gz) 79 Kb
  • LPC: Ligand-Protein Contacts for 4L05
  • CSU: Contacts of Structural Units for 4L05
  • Structure Factors (879 Kb)
  • Retrieve 4L05 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4L05 from S2C, [Save to disk]
  • Re-refined 4l05 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4L05 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4L05
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4L05, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4l05_A] [4l05]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4L05
  • Community annotation for 4L05 at PDBWiki (http://pdbwiki.org)

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